论文标题
SIA：生物医学命名实体的可扩展可互操作的注释服务器
SIA: A Scalable Interoperable Annotation Server for Biomedical Named Entities
论文作者
论文摘要
近年来，生物医学科学的大幅增加和发表量的固有增加。从这些来源中提取特定信息需要高度复杂的文本挖掘和信息提取工具。但是，将免费的工具集成到定制的工作流程中通常很麻烦且困难。我们描述了SIA（可扩展可互操作的注释服务器），这是我们对注释服务器（beacalm-tips）任务的Becalm技术互操作性和性能的贡献，可扩展，可扩展且可靠的注释服务。该系统目前涵盖了六种指定的实体类型（即，化学物质，疾病，基因，miRNA，突变和生物），并在httpse 2.0许可下可在https://github.com/erechtheus/sia上免费获得。
Recent years showed a strong increase in biomedical sciences and an inherent increase in publication volume. Extraction of specific information from these sources requires highly sophisticated text mining and information extraction tools. However, the integration of freely available tools into customized workflows is often cumbersome and difficult. We describe SIA (Scalable Interoperable Annotation Server), our contribution to the BeCalm-Technical interoperability and performance of annotation servers (BeCalm-TIPS) task, a scalable, extensible, and robust annotation service. The system currently covers six named entity types (i.e., Chemicals, Diseases, Genes, miRNA, Mutations, and Organisms) and is freely available under Apache 2.0 license at https://github.com/Erechtheus/sia.
