论文标题

合并和重复的联合建模下的物种树木估计:四重奏方法的样本复杂性

Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods

论文作者

Hill, Max, Legried, Brandon, Roch, Sebastien

论文摘要

我们考虑基因树进化的标准随机模型下的物种树估计,该模型融合了不完整的谱系分类(通过合并过程建模)以及基因的重复和损失(由分支过程建模)。通过对模型的概率分析,我们为广泛使用的基于四重奏的推理方法得出了样本复杂性界限,这些方法突出了亚临界和超临界方案的重复和损失率的效果。

We consider species tree estimation under a standard stochastic model of gene tree evolution that incorporates incomplete lineage sorting (as modeled by a coalescent process) and gene duplication and loss (as modeled by a branching process). Through a probabilistic analysis of the model, we derive sample complexity bounds for widely used quartet-based inference methods that highlight the effect of the duplication and loss rates in both subcritical and supercritical regimes.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源