论文标题
使用变压器改善跨数据库的脑组织分割
Improving Across-Dataset Brain Tissue Segmentation Using Transformer
论文作者
论文摘要
脑组织分割已经证明了通过基于体素的形态计量法量化MRI数据的极大效用,并突出了与大脑内部各种条件相关的微妙结构变化。但是,手动细分是高度劳动力密集的,由于MRI获取固有的属性,自动化的方法也挣扎了,因此非常需要有效的分割工具。尽管深度卷积神经网络(CNN)最近在脑组织分割方面取得了成功,但许多这样的解决方案并不能很好地推广到新数据集,这对于可靠的解决方案至关重要。变形金刚在自然图像分割方面表现出成功,并且由于其在CNN局部接受领域挣扎的输入中捕获长距离关系的能力,最近已应用于3D医疗图像分割任务。这项研究介绍了一种新型的CNN转化器混合体系结构,专为脑组织分割而设计。我们在四个多站点T1W MRI数据集中验证了模型的性能,涵盖了不同的供应商,现场强度,扫描参数,时间点和神经精神科状况。在所有情况下,我们的模型都达到了最大的一般性和可靠性。 OUT方法本质上是强大的,可以作为与大脑相关T1W MRI研究的有价值工具。 TABS网络的代码可在以下网络上获得:https://github.com/raovish6/tabs。
Brain tissue segmentation has demonstrated great utility in quantifying MRI data through Voxel-Based Morphometry and highlighting subtle structural changes associated with various conditions within the brain. However, manual segmentation is highly labor-intensive, and automated approaches have struggled due to properties inherent to MRI acquisition, leaving a great need for an effective segmentation tool. Despite the recent success of deep convolutional neural networks (CNNs) for brain tissue segmentation, many such solutions do not generalize well to new datasets, which is critical for a reliable solution. Transformers have demonstrated success in natural image segmentation and have recently been applied to 3D medical image segmentation tasks due to their ability to capture long-distance relationships in the input where the local receptive fields of CNNs struggle. This study introduces a novel CNN-Transformer hybrid architecture designed for brain tissue segmentation. We validate our model's performance across four multi-site T1w MRI datasets, covering different vendors, field strengths, scan parameters, time points, and neuropsychiatric conditions. In all situations, our model achieved the greatest generality and reliability. Out method is inherently robust and can serve as a valuable tool for brain-related T1w MRI studies. The code for the TABS network is available at: https://github.com/raovish6/TABS.