论文标题
固定随机环境中微生物生长的最佳代谢策略
Optimal metabolic strategies for microbial growth in stationary random environments
论文作者
论文摘要
为了在任何给定的环境中成长,细菌需要通过调整其监管和代谢自由度来收集有关中等成分的信息,并实施适当的增长策略。从标准意义上讲,当细菌以最快的速度生长在该培养基中时,就可以实现最佳策略。虽然这种最优性观点非常适合对周围环境具有完美知识的细胞(例如养分水平),但事物更涉及不确定或波动的条件,尤其是当变化在时间标准中发生的变化与(或比)相当(或比)组织响应所需的变化时。但是,信息理论提供了有关细胞如何在不确定性下对应力水平的不确定性选择最佳生长策略的食谱。在这里,我们分析了细菌代谢的粗粒,实验启发的细菌代谢模型的理论最佳方案,以在单个变量的(静态)概率密度(“应力水平”)描述的介质中生长。我们表明,当环境足够复杂时,增长率的异质性始终出现,并且当不可能对代谢自由度进行完美调整时(例如,由于资源有限)。此外,经常通过适度的微调有效地获得了与无限资源可实现的结果的结果。换句话说,复杂媒体中的异质种群结构在可用于探测环境并调整反应速率的资源方面可能相当强大。
In order to grow in any given environment, bacteria need to collect information about the medium composition and implement suitable growth strategies by adjusting their regulatory and metabolic degrees of freedom. In the standard sense, optimal strategy selection is achieved when bacteria grow at the fastest rate possible in that medium. While this view of optimality is well suited for cells that have perfect knowledge about their surroundings (e.g. nutrient levels), things are more involved in uncertain or fluctuating conditions, especially when changes occur over timescales comparable to (or faster than) those required to organize a response. Information theory however provides recipes for how cells can choose the optimal growth strategy under uncertainty about the stress levels they will face. Here we analyse the theoretically optimal scenarios for a coarse-grained, experiment-inspired model of bacterial metabolism for growth in a medium described by the (static) probability density of a single variable (the `stress level'). We show that heterogeneity in growth rates consistently emerges as the optimal response when the environment is sufficiently complex and/or when perfect adjustment of metabolic degrees of freedom is not possible (e.g. due to limited resources). In addition, outcomes close to those achievable with unlimited resources are often attained effectively with a modest amount of fine tuning. In other terms, heterogeneous population structures in complex media may be rather robust with respect to the resources available to probe the environment and adjust reaction rates.