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For objects in the low Earth orbit region, uncertainty in atmospheric density estimation is an important source of orbit prediction error, which is critical for space situational awareness activities such as the satellite conjunction analysis. This paper investigates the evolution of orbit error distribution in the presence of atmospheric density uncertainties, which are modeled using probabilistic machine learning techniques. The recently proposed HASDM-ML, CHAMP-ML, and MSIS-UQ machine learning models for density estimation are used in this work. The investigation is convoluted because of the spatial and temporal correlation of the atmospheric density values. We develop several Monte Carlo methods, each capturing a different spatiotemporal density correlation, to study the effects of density uncertainty on orbit uncertainty propagation. However, Monte Carlo analysis is computationally expensive, so a faster method based on the Kalman filtering technique for orbit uncertainty propagation is also explored. It is difficult to translate the uncertainty in atmospheric density to the uncertainty in orbital states under a standard extended Kalman filter or unscented Kalman filter framework. This work uses the so-called consider covariance sigma point (CCSP) filter that can account for the density uncertainties during orbit propagation. As a test-bed for validation purposes, a comparison between CCSP and Monte Carlo methods of orbit uncertainty propagation is carried out. Finally, using the HASDM-ML, CHAMP-ML, and MSIS-UQ density models, we propose an ensemble approach for orbit uncertainty quantification for four different space weather conditions.